RiboPipe: An assembly and analysis pipeline for sequencing data

RiboPipe is toolkit designed for automating the assembly, quality control, and analysis of ribosome profiling and other single-end RNAseq datasets. It is intended to be easy to use for bench and computational biologists and is quick to use out of the box.

RiboPipe is developed by Jordan Berg in the Rutter Lab @ the University of Utah, along with other collaborators.


Video walkthrough coming soon! See the Quickstart guide for more information.

Important notes

See the Important File Naming Conventions heading of the General Usage page for more information.


Coming soon


RiboPipe is freely available under a GNU General Public License (v3.0).


If you have questions, requests, or bugs to report, please use the Github issues forum.